dara.search package

Submodules

• dara.search.core module
  • remote_expand_node()
  • search_phases()
• dara.search.data_model module
  • SearchNodeData
    • SearchNodeData.current_phases
    • SearchNodeData.current_result
    • SearchNodeData.fom
    • SearchNodeData.group_id
    • SearchNodeData.isolated_extra_peaks
    • SearchNodeData.isolated_missing_peaks
    • SearchNodeData.lattice_strain
    • SearchNodeData.peak_matcher_scores
    • SearchNodeData.peak_matcher_threshold
    • SearchNodeData.status
    • SearchNodeData.get_peak_matcher()
    • SearchNodeData.pretty_output
  • SearchResult
    • SearchResult.extra_peaks
    • SearchResult.foms
    • SearchResult.lattice_strains
    • SearchResult.missing_peaks
    • SearchResult.phases
    • SearchResult.refinement_result
    • SearchResult.visualize()
    • SearchResult.grouped_phases
• dara.search.peak_matcher module
  • PeakMatcher
    • PeakMatcher.extra
    • PeakMatcher.get_isolated_peaks()
    • PeakMatcher.jaccard_index()
    • PeakMatcher.matched
    • PeakMatcher.missing
    • PeakMatcher.score()
    • PeakMatcher.visualize()
    • PeakMatcher.wrong_intensity
  • absolute_log_error()
  • distance_matrix()
  • find_best_match()
  • merge_peaks()
• dara.search.tree module
  • BaseSearchTree
    • BaseSearchTree.add_subtree()
    • BaseSearchTree.expand_node()
    • BaseSearchTree.expand_root()
    • BaseSearchTree.from_search_tree()
    • BaseSearchTree.get_all_possible_nodes_at_same_level()
    • BaseSearchTree.get_expandable_children()
    • BaseSearchTree.get_phase_combinations()
    • BaseSearchTree.refine_phases()
    • BaseSearchTree.score_phases()
  • SearchTree
    • SearchTree.get_search_results()
    • SearchTree.show()
  • batch_peak_matching()
  • batch_refinement()
  • calculate_fom_and_strain()
  • get_natural_break_results()
  • group_phases()
  • remove_unnecessary_phases()

Module contents

Phase search module used for phase identification.